* fix(javascript): omit self-referential static references with disclosure
A bundled module that requires its own key (`r(50)` inside webpack
module 50) resolved, through the static-reference composer, to its own
module node. The resulting self-referential imports edge failed result
validation and lost the entire analysis ("Result schema rejected 1
issue ... (custom)"). This is the same invariant as #1146; #1152 fixed
the bundler async-chunk composer, and this is the remaining adjacent
composer.
Skip a reference whose resolved target is its own source, count it, and
disclose the omission the way #1152 discloses async-chunk references.
Sibling requires are kept.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
* refactor(javascript): share the self-reference omission disclosure
The self-import (#1130), async-chunk (#1152) and static-reference
disclosures repeated one sentence template in three composers, and the
new test repeated the analyze-and-check sequence of its neighbour. That
put jscpd at its 2.5% threshold. Share the template through
selfReferenceOmissions with identical wording, and share one test helper
for the graph-wide self-reference invariants.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
---------
Co-authored-by: Claude Opus 5.5 <[email protected]>
* fix(javascript): omit self-referential import edges with disclosure
A specifier that resolves back to the importing module itself produced an
imports edge from a module to itself, which the application graph schema
forbids; one such specifier failed result validation and lost the whole
analysis. Skip those edges at composition time and disclose the omission
count in the graph limitations.
Fixes#1129
* test(javascript): verify self-import behavior through the compiled CLI
---------
Co-authored-by: BaaRai <[email protected]>
Co-authored-by: morluto <[email protected]>
* fix(setup): treat empty client config files as new documents
An empty MCP config file (for example Antigravity's mcp_config.json, which
the client can create with zero bytes) was reported as malformed, which
blocked rea setup from configuring every other detected agent. Parse a
whitespace- or BOM-only JSON/JSONC file as an empty document and write a
fresh document over it.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
* test(setup): use explicit unicode escape for BOM-only empty config case
---------
Co-authored-by: Claude Opus 5.5 <[email protected]>
Co-authored-by: morluto <[email protected]>
* fix(update): accept npm 12 release metadata
(cherry picked from commit aa400d18c9)
* fix(update): classify npm release metadata without a spawn mock
Keep the npm 11 string and npm 12 one-element array accepted by the
cherry-picked lookup, and separate invalid metadata from a failed
registry command.
---------
Co-authored-by: Dapo Olaomo <[email protected]>
* feat(clients): register Grok Build and Grok Bot during setup
Detect both clients and install the local REA MCP registration the same
way setup already handles the other agents. Grok Build edits only the
REA tables in its TOML config and sets startup_timeout_sec to 30. Grok
Bot writes the mcpServers.rea entry into mcp.json. That file is the
registration to add to the signed-in account; setup does not call the
account API.
Filed by Grok.
* fix(clients): clear a disabled Grok Build registration during setup
Grok Build keeps a server suppressed when its name stays in
disabled_mcp_servers, and setup was treating that file as already aligned.
Setup now removes only that name, doctor reports the registration stale until
it is gone, and uninstall keeps comments in an inline table whose only server
was REA. Split the lifecycle suite and reflow the get-started page so static
checks pass.
* fix(verify): check packed Hopper search as literal-only
The package verifier still called a regex probe that main deleted. The
native bridge refuses regex and joins string hits with typed records, so
the restored probe stubs that inventory and the check asserts the literal
matches and the regex refusal. The new README translations also name
Grok Build and Grok Bot.
* fix(clients): stop treating a Grok Bot data directory as registered
Grok Bot stores connectors in the signed-in account and runs them on its
hosted computer. Setup no longer writes mcp.json or reports that file as
aligned. Doctor and setup tell the caller to add the server from the
Grok Bot chat.
* fix(clients): drop multiline Grok disable-list entries
Decode disabled_mcp_servers strings with the document parser so a
multiline basic or literal string that loads as rea is removed.
---------
Co-authored-by: Grok <[email protected]>
Co-authored-by: Cursor Agent <[email protected]>
Co-authored-by: morluto <[email protected]>
Collect references from the complete owned function body and exact entry,
including instruction-interior destinations and embedded-data sources.
Bind the corrected semantics to the analysis profile so legacy snapshots
cannot replay incomplete results. Preserve snapshot mismatch reasons and
recovery advice through CLI and MCP without disturbing live sessions.
Return exact entry candidates for ambiguous function names. Expand the
real-provider regression workflow and replace redundant parser assertions
with malformed-output coverage through the pinned MCP client.
Verified with Ghidra 12.1.4 on macOS arm64: full host-native lane, real
CLI/MCP boundary probes, 30 focused tests, and typecheck/lint.
Preserve native document identity, nullable bookmark labels, address diagnostics, segment-end byte prefixes, and verified file mappings. Validate batch rename addresses before mutation.
BREAKING CHANGE: remove set_current_document. Use open_binary to switch targets; document arguments are scoped to the active target.
* test(javascript): reproduce TypeScript source dialect loss
Add native directory/ASAR and built public CLI owners with actual locked native TypeScript syntax/emit and independent Babel source-range oracles. Production and every workflow remain unchanged.
Signed-off-by: Rudy Celekli <[email protected]>
* test(javascript): admit isolated native compiler inputs
Use the actual TypeScript7 producer-requested --ignoreConfig flag when supplying isolated source filenames. Preserve every graph input, owning assertion, control and production file.
Signed-off-by: Rudy Celekli <[email protected]>
* fix(javascript): parse plain TypeScript artifacts without JSX
Select the plain .ts dialect using the artifact source path so valid angle-bracket assertions retain syntax-derived graph facts. Preserve existing JSX defaults and all other dialects. Document the inert artifact parser contract.
Signed-off-by: Rudy Celekli <[email protected]>
---------
Signed-off-by: Rudy Celekli <[email protected]>
* fix(hopper): diagnose MCP provider failures with stage, state, and request context
* fix(hopper): retain health at the actual provider lifecycle boundary
* test(hopper): distinguish socket loss from later observed process exit
* test(hopper): cover observed exit separately from socket-first replies
---------
Co-authored-by: N0zoM1z0 <[email protected]>
* test(javascript): reproduce HTML carriage return source coordinates
Compare actual resolved and unresolved artifact graph evidence with parse5 source locations across HTML line terminators and UTF-16 columns. Exercise both public built CLI analysis commands. Tests only; production and workflows unchanged.
Signed-off-by: Rudy Celekli <[email protected]>
* fix(javascript): preserve HTML carriage return source ranges
Treat LF, CRLF, and bare CR as HTML line endings when projecting actual script opening-tag offsets to retained source ranges. Preserve UTF-16 column semantics and document the source-coordinate contract.
Signed-off-by: Rudy Celekli <[email protected]>
---------
Signed-off-by: Rudy Celekli <[email protected]>
* fix(process): name the reason two captures cannot be compared
compare-process-captures rejected captures whose comparison contracts
differ, but the reason never reached the caller. The CLI printed
"Process command could not complete... run `rea doctor`". MCP wrapped
the error in an AnalysisInputError with no issues ("Analysis input is
invalid. Check the arguments"). A stale capture under
max_capture_age_ms got the same treatment.
Throw typed input issues that name the differing contract fields, or
the stale side with its completion time and age, and let
runDerivedOperation pass AnalysisInputError through unchanged. Document
what the comparison contract covers.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
* fix(process): report CLI trace-spec issues under the MCP input path
The CLI reported an invalid trace specification under operation
"compare-process-captures" with root-relative issue paths such as
["events"]. MCP reports the same input as compare_process_captures with
paths under trace_spec. Use the canonical operation name and prefix
trace_spec so both surfaces describe the same input identically.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
* fix(process): name the side and constraint for unusable capture Evidence
Adjacent compare_process_captures failures still lost their reason.
Over MCP, Evidence from another workflow, tampered Evidence and an
invalid capture result all became "Evidence is invalid or has changed".
The CLI said only "Capture evidence is malformed".
Parse each side separately. Evidence from another workflow is an input
issue on left or right that names the operation and predicate it has.
Tampered Evidence and invalid capture results stay integrity
mismatches, and their message now carries the validation detail.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
---------
Co-authored-by: Claude Opus 5.5 <[email protected]>
* fix(managed): keep caller-input details in managed workflow errors
The managed workflows wrapped every rejected input as
`new AnalysisInputError(op, { cause })` with no issues. The projected
result said "Correct the listed arguments and retry" and listed nothing:
- `rea import-managed-reconstruction`,
`rea project-managed-application-graph` and
`rea verify-managed-native-boundaries` lost every schema issue for
malformed JSON;
- domain checks such as a reconstruction text hash mismatch, or Evidence
from the wrong operation, lost their message on CLI and MCP;
- `rea compare-managed-members` with a missing file did not say which
path failed.
Add managedInputError, which projects Zod issues with their paths and
keeps a domain TypeError's message, as the JavaScript workflows already
do. Return the BinaryTargetError from an unopenable comparison path
unchanged, with details.path, as every other path-based command does.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
* fix(managed): keep nested Evidence schema issues off request paths
A ZodError raised after the request parsed comes from a nested
Evidence result, so its issue paths are relative to that result.
Projecting it against the whole request reported, for example,
artifact.sha256 as a missing request field. Keep request-relative
projection for the raw request's schema failures. Report nested schema
failures as root issues whose message names the nested location.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
* test(managed): type the malformed nested Evidence fixture
Co-Authored-By: Claude Opus 5.5 <[email protected]>
* fix(workflows): keep input details in the remaining workflow services
Inventory projection (project_android_application_graph and
project_apple_application_graph), build_reconstruction_obligation_ledger
and evaluate_reconstruction_coverage had the same issue-less
`AnalysisInputError({ cause })` as the managed services. For example,
evaluating coverage for an unknown boundary returned "Correct the listed
arguments" with no issues, dropping "Unknown reconstruction boundary: X"
on CLI and MCP.
Move the helpers to src/application/workflowInputError.ts and use them
for these services: requestInputError for raw request schema failures,
workflowInputError for nested schema and domain constraint failures.
Classification is unchanged.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
---------
Co-authored-by: Claude Opus 5.5 <[email protected]>
Retain complete authenticated application Evidence when the repeated MCP representation exceeds the default receive frame or Node string limit. Return a typed transport constraint, keep useful followup queries available, and stream full canonical bundles to atomic destinations.
Verify complete Notion and Obsidian workflows on Linux and native Windows, full CLI/Evidence parity, and real large Chrome screenshot recovery. Preserve complete success contracts and caller-selected evidence paths.
Refs #1065, #1053.
Reading a nonexistent Evidence bundle or snapshot, or exporting into a
directory that does not exist, failed as reason "io" with "Evidence
file could not be accessed. Check file permissions", and with no path.
In `rea compare` the caller could not tell which of the two files
failed.
Map ENOENT and ENOTDIR to a new "missing" reason with read- and
write-specific advice. Every EvidenceFileError now carries the resolved
caller path in its projected details. Permission and other I/O failures
keep the existing advice.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
evidence-import, evidence-export, compare and the MCP bundle tools gave
every rejected file the same message: "Evidence is invalid or has
changed. Recreate or re-import it". That included a single Evidence
record, which is what every command prints, so `rea compare a.json
b.json` on two command results looked like tampering.
Report a single record as such and point to export_evidence_bundle.
Locate the first schema issue, and keep thrown constraint messages such
as a semantic identifier mismatch. EvidenceIntegrityError now accepts
the userMessage option that other typed errors already use.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
* fix(domain): bound JSON depth and oversized payloads at parsing boundaries
jsonValueSchema re-walked hostile input through z.json()'s recursive core, so a deeply nested payload from an MCP tool argument, inline evidence, provider result, or keyed archive threw RangeError: Maximum call stack size exceeded instead of a validation issue. The schema now runs an iterative depth guard first and keeps z.json() for full JSON semantics behind it, which also turns cyclic values into validation errors. The 1000-edge limit stays far below the range where the recursive core overflows its stack (measured between 2000 and 3000 on Node 24) while leaving room for legitimately deep target-derived trees such as compiled NIB view hierarchies, and the guard narrows with a typed record check instead of any or unchecked casts. The non-recursive JSON Schema advertisement stays intact on both the public and standard projection paths. Two payload sizes get explicit budgets tied to their producer constraints: web text artifacts reject beyond the 16 MiB source budget the web tooling already advertises, and native UI screenshot base64 beyond the 64 MiB helper output budget. Regenerated product catalog, skill catalog digest, and completion-ledger manifest follow the schema-boundary change.
* fix(validation): preserve depth diagnostics across process inputs
---------
Co-authored-by: N0zoM1z0 <[email protected]>
* feat(native): inspect recorded crashes through pwntools and pwndbg
* fix(native): bind core note semantics to raw owner bytes
* fix(native): validate recorded core ABI and evidence scalars
* fix(native): require complete recorded note interpretations
* fix(native): bind physical core notes to original headers
main now carries #1037 (skill version 30, reworded native binary row):
- README_ja/ar/ko/zh: take main's tables and count
trace_dylib_resolution in the artifact graph row (5 -> 6).
- Skill: move to version 31.
- Regenerate the product catalog, conformance manifest, skill digest and
package metadata (137 tools).
Co-Authored-By: Claude Opus 5.5 <[email protected]>
main now carries #964 (skill version 29, macOS native row 7 -> 8):
- README_ja/ar/ko/zh: take main's tables and count
trace_dylib_resolution in the artifact graph row (5 -> 6).
- Skill: move to version 30.
- Regenerate the product catalog, conformance manifest, skill digest and
package metadata (136 tools).
Co-Authored-By: Claude Opus 5.5 <[email protected]>
