* feat: add FreeBuff agent support for REA setup
Register FreeBuff as a supported setup client using the shared user
agents directory (~/.agents/mcp.json with mcpServers, skills in
~/.agents/skills), which matches what FreeBuff Desktop loads. Adds the
client definition, boundary tests, supported-agent docs, and the skill
reference client list.
* fix(freebuff): detect FreeBuff from its profile directory, not shared .agents
The ~/.agents marker made FreeBuff appear installed for any home where
REA had installed shared skills (the default skill destination, also
Gemini CLI's), producing false doctor failures. Detect FreeBuff from
its own fixed profile directory ~/.config/freebuff-desktop instead,
and add a regression test covering a home with only the shared agents
skill directory.
* fix(setup): require product evidence for FreeBuff discovery
Address review findings at their producing boundaries and preserve directly affected consumers. Source inspection and git diff --check completed. Tests and automated checks were not run at the user’s explicit request.
* fix(uninstall): retain unverified shared client configuration
* fix(clients): preserve scoped removal evidence
* fix(doctor): omit undefined selectedClientIds under exactOptionalPropertyTypes
Passing selectedClientIds explicitly as undefined fails typecheck on this
branch (TS2379), which blocks the focused test workflow before any test
can run. Spread the option only when defined.
* fix(update): separate ownership evidence from product applicability
rea update's maintenance scope inspected only product applicability
evidence, so when a FreeBuff profile was absent but REA already owned a
version-pinned row in the shared ~/.agents/mcp.json, the plan omitted
freebuff and left the integration stale. FreeBuff now declares its
registration storage as shared, which proves ownership of an owned row
but never product applicability, and maintenance requests ownership
evidence through that declaration instead of reinterpreting the shared
paths. Doctor and setup keep readiness evidence, foreign rows stay out
of maintenance, and the Doctor exactOptionalPropertyTypes fix makes the
focused test workflow runnable.
* test(dotnet): split oversized operand extent diagnostics describe
The describe callback reached 162 lines (max 150), failing
max-lines-per-function and blocking the pre-push check for this branch.
Move the single-case extent scenarios into their own describe; no test
content or order changes.
* fix(update): preserve ZCode's disabled shared registration during maintenance
The shared user agents file doubles as ZCode's fallback, where
`enable: false` disables the registration. Ownership-based maintenance
read that row as a FreeBuff registration, whose format does not
recognize the flag, so the row was selected and the emitted setup
command rewrote it, dropping the flag and silently re-enabling a
registration the user had disabled.
registrationActivation now honors `enable: false` for any client whose
registration storage is shared, because the activation fact binds every
reader of that storage. Maintenance leaves such rows out; doctor
reports them as stale, matching ZCode's own treatment.
* fix(doctor): let explicit client selection authorize the config read
When an ACL or an inaccessible shared parent made every access probe
fail, a client selected by name was omitted before the configuration
read could return its unreadable-config detail, so doctor reported it
as not detected with installation remediation: an unresolved selected
path collapsed to absence.
An explicit selection now authorizes the read outright and the probes
serve automatic discovery only. A selected client with an unreadable
config reports invalid with the read failure; one with no config
reports missing; automatic discovery still probes before inspecting.
* fix(uninstall): share shared-storage checks between ZCode and FreeBuff
clients() queued ~/.agents/mcp.json twice: once as zcode_fallback and once
as freebuff. ZCode has no discoveryPaths, so its strict read still blocked
uninstall on malformed shared text, despite FreeBuff's new retain-and-continue
behavior. For a valid owned entry, ZCode removed it first, so FreeBuff reported
skipped rather than removed.
Make the shared file's checks and removal one shared decision:
- Add zcodeDiscoveryPaths to ZCode so it has its own applicability evidence.
- Gate zcode_fallback push on applicable, not just zcodeFallbackPath presence.
- Report shared storage ownership as one decision for both clients:
FreeBuff and ZCode now use clientOwnershipEvidencePaths together, so a
recognizable REA-owned row proves ownership once for the shared storage, and
both clients report the same result consistently.
Co-Authored-By: Claude Opus 4.6 <[email protected]>
* fix(uninstall): merge duplicated host and prove shared ownership from owned rows
Uninstall.ts declared systemUninstallHost twice, preventing module load,
with the exported copy returning only clients and the second copy missing
clientWriteBlocker. Merge into one exported host carrying both blockers.
hasOwnershipEvidence used access() existence, so an unrelated malformed
~/.agents/mcp.json established ownership and blocked every removal.
Ownership now requires a readable, recognizable REA-owned row via the
injected filesystem, so unrelated shared data stays retained.
Also cover ZCode discoveryPaths in its path test.
* fix(uninstall): keep denied product-local configurations fail-closed
Unproven product applicability marked every configuration path of that client unverified, so a denied ZCode profile turned an unreadable product-local config into a retained item: uninstall continued and could report complete with REA still registered. The retain-and-continue exception now applies only to storage REA does not own, classified once by clientSharedRegistrationPaths (shared configuration plus another product's same-scope fallback).
Covers the Greptile P1 on Uninstall.ts. Validation: the new test fails on the pre-fix Uninstall and passes after it; freebuff/zcode/updateMaintenance/bom/dsh suites green; clientLifecycle, clientRegistrationStatus and claudeDesktop keep the same 8 host failures as the pre-merge baseline (symlink EPERM, stale-vs-aligned on Windows).
* fix(update): retain FreeBuff when ZCode reads the shared fallback
Maintenance deduplicated clients on the path each inspection read, so ZCode's fallback view of ~/.agents/mcp.json marked that file "covered" and dropped FreeBuff from the scope. ZCode setup writes ~/.zcode/cli/config.json and deliberately leaves the fallback untouched (docs/client-configuration.md), so the emitted command refreshed only ZCode while the shared row both products load stayed pinned to the old package version. Each setup action rewrites only its own configuration path and no other action rewrites the shared row, so every selected client keeps its own maintenance action; the read-path covered/deduped filter is removed.
Covers the Codex P2 on UpdateMaintenance.ts:104. Validation: the new regression fails on e2fdec384 with {clients:["zcode"]} and passes with {clients:["freebuff","zcode"]}; updateMaintenance 31/31, setupClientConfigCleanupOwnership, cliUpdateAlias, updateOutput, cliStartupImports green; tsc --noEmit, oxlint (0 errors) and oxfmt --check clean; clientRegistrationStatus keeps the same 4 symlink/stale-vs-aligned failures this Windows host has on base e2fdec384 (verified by stashing the change).
🤖 Generated with Codebuff
Co-Authored-By: Codebuff <[email protected]>
* fix(uninstall): preserve completed reads as shared ownership evidence
hasOwnershipEvidence caught every read failure and kept scanning, so a handle-close failure after a successful read — a RegularFileCleanupFailure whose completed outcome still contains the exact shared-file text — was discarded as "no proof". FreeBuff's applicability-unverified storage therefore never got its ownership fact, and once the retained handle blocked later reads, readClientConfiguration downgraded them to retained: inspection passed, removals soft-failed, and runUninstall(true) could purge REA data while the active shared registration remained. The catch now parses the completed outcome for the ownership text while missing or unreadable storage and malformed data keep their proves-nothing semantics, so ownership holds and every later read failure stays blocking.
Covers the Codex P2 on Uninstall.ts:252. Validation: the new regression fails on 4dbfdf1a9 (freebuff reports no blocking failure while the poisoned-scope error lands on claude_code) and passes after; setupClientConfigCleanupOwnership 25/25; the other 21 Uninstall-consumer suites are byte-identical to base 4dbfdf1a9 (61 pre-existing Windows-host failures: symlink EPERM, stale-vs-aligned); tsc --noEmit, oxlint (0 errors, same 6 warnings) and oxfmt --check clean.
🤖 Generated with Codebuff
Co-Authored-By: Codebuff <[email protected]>
* fix(uninstall): keep owned-row proof through removal refusals
hasOwnershipEvidence treated any clientRegistrationRemoval refusal as no ownership: an effective REA-owned rea member shadowed by an earlier foreign duplicate (shadowed_unowned_member), or an owned native row beside a foreign V1 fallback (foreign_legacy_fallback), discarded the already-parsed positive row fact. With FreeBuff unverified and close failures recurring on the preflight/removal rereads, those failures were then downgraded to retained, so runUninstall(true) removed the skill and purged REA data while the active owned row remained. The refusal now carries the owned rows that motivated it — the refusal only refuses the edit — and hasOwnershipEvidence evaluates that fact on both paths; preflight and removal keep refusing the unsafe edit exactly as before.
Covers the Codex P2 on Uninstall.ts:269. Validation: the new regression fails on 225cb214a (freebuff reports no blocking failure while the poisoned-scope error lands on claude_code) and passes after; setupClientConfigCleanupOwnership 26/26; the 21 Uninstall-consumer suites are byte-identical to the recorded 225cb214a baseline (61 pre-existing Windows-host failures: symlink EPERM, stale-vs-aligned); tsc --noEmit, oxlint (0 errors, same 6 warnings) and oxfmt --check clean.
🤖 Generated with Codebuff
Co-Authored-By: Codebuff <[email protected]>
* fix(uninstall): keep unresolved discovery probes from softening shared failures
The discovery probe swallowed every stat failure, so a FreeBuff profile denied with EACCES/EIO was indistinguishable from an absent profile: shared storage was marked applicability-unverified and, when ~/.agents/mcp.json also remained unreadable, the ownership and removal reads softened to retained. runUninstall(true) then removed the skill and purged REA data while an installed FreeBuff could still hold an active registration — the regression even reports complete. Absence (ENOENT) is now the only state that leaves shared paths unverified; any other probe failure leaves applicability unresolved, and shared-config failures stay blocking.
Covers the Codex P2 on Uninstall.ts:318. Validation: the new regression fails on 7572a7082 with status complete and purged data and passes after; freebuffClientConfiguration 13/13; the Uninstall-consumer batches are byte-identical to the recorded baselines (61 pre-existing Windows-host failures: symlink EPERM, stale-vs-aligned); tsc --noEmit, oxlint (0 errors, same warning rules) and oxfmt --check clean.
🤖 Generated with Codebuff
Co-Authored-By: Codebuff <[email protected]>
* fix(uninstall): retain completed configuration reads as removal evidence
A close failure after a completed read discarded the text that read
produced, so an owned registration row the text proves softened to
retained. The completed text now drives removal, keeping shared-config
failures blocking when ownership evidence exists.
Co-Authored-By: Anthropic <[email protected]>
* fix(uninstall): stop removal when a cleanup retry leaves a handle unreleased
A completed reread whose handle the cleanup retry cannot release now fails
blockingly instead of serving the text: with no owned row, the soft path
let removeAll purge managed data before close() reported the incomplete
cleanup. The completed text is served only after the retry releases the
handle; an unreleased handle is REA's own failure, never applicability
uncertainty, so it bypasses the retained softening.
Co-Authored-By: Anthropic <[email protected]>
* fix(uninstall): keep the ZCode fallback when its profile probe is unresolved
A denied or failed profile probe leaves ZCode's applicability unresolved,
never absent, but the fallback branch dropped the shared row on
applicability alone: with the native config and FreeBuff's profile both
absent, an installed ZCode kept its uninspected registration while
uninstall purged skill and data. Unresolved probes now keep the fallback
in scope with the same fail-closed treatment as other unresolved shared
paths; definitive absence still keeps ZCode out of another product's
primary storage.
Co-Authored-By: Anthropic <[email protected]>
* fix(setup): preserve a shared row's enable:false during FreeBuff repair
The shared agents file doubles as ZCode's fallback, so its `enable: false`
binds every reader: doctor now reports the disabled row as stale for
FreeBuff, but following that remediation rebuilt the generic JSON entry
without the flag and silently re-enabled a registration ZCode disabled.
Repairs of shared storage now carry the activation fact forward, while a
client's own native storage keeps its established single-reader repair
contract; the denied-profile uninstall regression also pins the
fallback's new fail-closed inspection beside the denied read.
Co-Authored-By: Anthropic <[email protected]>
* test(uninstall): retarget the completed-reread regression to a released retry
The concurrent-writer regression held the reread handle open forever,
which the fail-closed path now serves: it duplicated the unreleased-handle
regression while documenting the opposite contract. The fixture's close
spy gains a failure limit so the cleanup retry releases the handle, and
the test again proves the completed text drives removal of the
concurrently added owned row, with purge verified against the cache
layout purge actually removes.
Co-Authored-By: Anthropic <[email protected]>
* fix(doctor): report a preserved shared disable as a manual conflict
Preserving a shared row's enable:false left doctor recommending a setup
run that registrationCurrent correctly treats as already current, so the
scoped doctor returned needs_human forever. The shared-enable
interpretation now has one owner, sharedEnableFlagBinds, used by both
the activation rule and the remediation: a row disabled through the
shared flag reports the manual conflict and states that rea setup will
not change it, instead of an endlessly ineffective repair.
Co-Authored-By: Anthropic <[email protected]>
* fix(doctor): keep a native ZCode disable on the setup repair path
The manual-conflict remediation matched a native zcode row through
sharedEnableFlagBinds, but setup drops enable:false on single-reader
storage, so a native disabled registration was told setup would not
change it. The remediation now reads setup's own writer rule,
exported as setupPreservesDisabledActivation: shared storage and the
zcode fallback view keep the manual-conflict message, while a native
row keeps the working rea setup instruction. Regressions pin both
remediations.
🤖 Generated with Codebuff
Co-Authored-By: Codebuff <[email protected]>
* revert: drop the unrelated managed-CIL describe split
The split does not belong to FreeBuff client support and only widens this
PR's diff.
🤖 Generated with Codebuff
Co-Authored-By: Codebuff <[email protected]>
* fix(uninstall): remove the shared agent registration once for both clients
ZCode's ~/.agents/mcp.json fallback and FreeBuff's own configuration queued the
same physical file twice, so ZCode removed the row and FreeBuff then reported
it absent, losing the outcome for the client that owns the file.
Resolve every configuration path to one owner -- the client whose
configuration it is -- and project that single inspection and removal to each
client that loads it. A fallback reader still contributes its discovery probe,
so an installed or unresolved reader keeps the shared file fail-closed.
Discovery also accepted a dangling ~/.config/freebuff-desktop link, which setup
and doctor reject because they follow the target, so an unrelated malformed
shared file blocked every other removal. Resolve the link before treating the
profile as installation evidence, keeping lstat for removal safety.
Also date the FreeBuff release wording against the published 6.7.0 package.
* fix(uninstall): keep a row per client when two clients own one file
OPENCODE_CONFIG can point OpenCode at FreeBuff's configuration file, where
OpenCode writes `mcp.rea` and FreeBuff writes `mcpServers.rea`. Grouping by
filename gave that path a single owner, so uninstall removed only OpenCode's
row, reported that removal for FreeBuff, and could purge managed data with
FreeBuff's registration still active.
Share the decision only through a fallback view of another client's row: every
client that declares the path as its own configuration keeps its own
inspection and removal, and the fallback reader reports each of them.
* fix(clients): preserve discovery and fallback registration identity
Follow product discovery link targets without losing configuration entry
presence or explicitly selected inspections. Associate fallback readers with
the format owner's registration table and project outcomes by owner and path,
so OpenCode removal cannot be reported as a ZCode fallback removal.
All three new boundary regressions fail against the previous source and pass
with the fixes. Validation: check:fast; 217 focused tests passed; the two
changed test files were rerun with 50 passing tests. No installed FreeBuff
client was launched.
---------
Co-authored-by: morluto <[email protected]>
Co-authored-by: Claude Opus 4.6 <[email protected]>
Co-authored-by: Kaoru0822 <[email protected]>
Co-authored-by: Codebuff <[email protected]>
Remove test-only completion and historical manifest parsers, use authoritative completion schemas, and keep graph hashing with the validated manifest producer. Verify commitments with independent canonical JSON and SHA-256 checks through domain and public CLI workflows.
Construct integer formats directly while preserving bounds, refinements, metadata and current shared schema owners. Keep Incur-dependent CLI numeric coercion declarations unchanged.
Verify canonical advertisements, 126 numeric boundary cases, 974 actual CLI parser cases, broad source tests and real public-artifact SDK workflows. Record 72 normal tasks and 12 separate owned-inspector heap diagnostics with whole-family resource bounds; distinguish SDK spans and asymmetric audit overhead. Generate numerical report sections from receipts and reject stale tables through documentation conformance checks.
Closes#6236. Current-head CI and Greptile pass; actionable review findings are addressed. Codex review was unavailable due repository usage limits.
* fix(reference): report entries beyond the path limit as I/O failures
Reference-source traversal joins each child onto the root path. A valid
tree whose nested entries exceed the platform's absolute path limit
(PATH_MAX 1024 on macOS) makes lstat fail with ENAMETOOLONG. The
reader's filesystem error allow-list lacked that code, so
filesystemFailureDetail returned undefined and the native rejection
escaped both readReferenceSource and importReferenceSource instead of
becoming the existing failed `io` entry.
Add ENAMETOOLONG to the allow-list, matching the JavaScript application
reader's list. Readable siblings stay in the graph and the unreachable
entry is recorded with its OS message.
Fixes#2652
Co-Authored-By: Claude Opus 5.5 <[email protected]>
* test(reference): assert the imported graph keeps readable and failed entries
Co-Authored-By: Claude Opus 5.5 <[email protected]>
* fix(process): report no remaining time after a provider deadline fires
Node timers can fire while performance.now() is still a fraction of a
millisecond short of the monotonic deadline. ProviderStartupDeadline then
reported interruption "timeout" and an aborted signal while remainingMs()
returned ceil(0.x) = 1, so polling loops guarded by remainingMs() > 0
(Hopper and Ghidra startup) could run past an elapsed deadline, and the
real-timer test "aborts a bounded wait when its real monotonic deadline
expires" failed intermittently in CI (expected 1 to be 0).
Once the deadline's own timer has classified a timeout, report zero
remaining time. A deterministic regression test fires the timer with the
monotonic clock 0.4 ms short of the deadline.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
* fix(reference): preserve path limit entry uncertainty
* fix(reference): preserve unknown entry failures and identity
* fix(reference): type unknown-kind exclusions and keep them out of symlink counts
The metadata-failure path offers "unknown" to exclusion predicates, but
the predicate type only admitted concrete kinds, which broke the build.
Directory-only secret and ignore rules now also match an unknown-kind
entry (it may be a directory), and the summary counts unknown entries
separately instead of as symlinks.
Co-Authored-By: Claude Opus 5.5 <[email protected]>
---------
Co-authored-by: Claude Opus 5.5 <[email protected]>
Co-authored-by: morluto <[email protected]>
Co-authored-by: Codex <[email protected]>
Normalize path facts once at the owning filesystem boundary, preserve caller spelling and unavailable inventory members, and retain typed read failures. Record exclusion entry kinds so only proven directories can establish descendant symlink targets; omitted legacy kinds stay unknown.
Reviewed fixes include #1969, #2642, #2759, and #2994.
Validation: 26 reference graph source tests passed; prior artifact checks passed 275 tests with one Windows-only skip. Updated compiled import workflows are included in final validation after regeneration.
Record the exact matching pattern and distinguish project, default, caller, and configured-sensitive exclusions without changing ignore ordering. Include that provenance in graph commitments and validate the contract through compiled CLI and MCP consumers.
BREAKING CHANGE: Pattern-based reference graph exclusions require pattern and distinguish project-ignored and default-ignored reasons. Re-import saved graphs that omit matching patterns.
* fix(reference): join internal symlink targets with the inventory NFC normalizer
checkSymlinks resolved an internal symlink target with bare
posix.normalize and looked the result up in the inventoried path set.
A target that a filesystem reports in NFD (macOS readlink commonly
does) joined to an NFD spelling while the inventory holds NFC, so
validation reported "Internal symlink target must resolve to an
inventoried entry" for a target the inventory actually contains.
Route the join through normalizeJoinedLogicalPath, the same inventory
identity normalizer #1513 applied to the runtime, HTML/module, and
import joins from #1488. The feature-seed NFKC query fold stays a
query.
Refs #1488
* fix(reference): preserve source spelling during symlink lookup
---------
Co-authored-by: morluto <[email protected]>
Remove forwarding wrappers and shadow aliases, migrate callers and verification scripts to their owners, and share one exhaustive semantic resource-bound projection.
Compare complete function dossiers directly, remove unreachable truncation and collection wrappers, and preserve deterministic Unicode ordering. Require real external reference targets instead of display placeholders.
BREAKING CHANGE: function comparison results no longer advertise the unreachable truncated state or counter.
* fix: emit v-mode-compatible patterns for tool schemas
Character classes in emitted patterns carried unescaped '-', '/' and '['. Annex-B and u-mode accept them, so REA's own Zod validation (u) and every u-based validator never saw a defect, but v-mode rejects ClassSetSyntaxCharacters and Ruby rejects [^s[]]. With 6.1.0 tools/list, 117 pattern fields across 11 tools were rejected under v.
The characters are escaped as \x2d, \x2f, \x5b and \x5d rather than \-/\//\[, because oxlint --fix removes an escaped '-' inside a character class as a useless escape, so an escape-only change does not survive the pre-commit hook. \x2d-style escapes are valid under Annex B, u and v, are matched identically, and are not useless-escape candidates.
22 pattern literals in 18 files are touched; no other token changes.
* fix: replace the Zod offset pattern and guard the advertised catalog
The offset datetime site projected Zod's offset class as [ +- ], which no escape in this repository's sources can reach, so evaluate_reconstruction_coverage stayed unreachable for exactly the clients this change targets. It now uses offsetDateTimeSchema in src/domain/offsetDateTime.ts: the same accepted set with the offset class escaped as [ +\x2d ].
Adds tests/boundary/mcp/advertisedPatternsVMode.test.ts, which performs the real tools/list projection, traverses every advertised input and output schema, compiles each pattern under v, and asserts the inventory it walked so a silent traversal collapse fails instead of passing vacuously.
* refactor(domain): consolidate canonical ordering and digest helpers
Single owner for code-point ordering (domain/canonicalOrdering.ts)
and canonical JSON digests (domain/comparisonSemantics.ts). Delete
all local compareCodePoints/compareText/digestCanonical duplicates
and migrate every importer. No re-export shims.
* fix(ci): allow slower real browser startup
